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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCTAGCGTTTGCCTCGCAAATTTCGGCCAATTCTTCGCCGTGATTCCTCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTGgtgagtagctgattcttttatctctttttatttatttttttgttttcgtgtttttttggcggtaatatttttgggggctggatctagtatttgggatttc...

Basic information

species Vitis vinifera
transcript Vv00s0194g00070.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189634|gb|CF608983.1|CF608983
EST:     TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTGGGCTG                         GTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT
genomic: TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTGgtgagtagct ... ttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT
EST: gi|110730941|gb|EE108593.1|EE108593
EST:     TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTG                         GTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT
genomic: TCCGCTTTCTCTGCTTCGTCATAGCTCTCTGCATCTTCTCTCCTTGGCTGgtgagtagct ... ttgtttttagGTTGTAATCTCAAGTGGGTAAGCTGCTTCCTGTAGAAAATTGATTTCTGGT