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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGATTAGGTTCGATGTTCCTCCTCATAGAGCCTATCATTTCTGCCACCAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactttgacatttttctctgaaatcttcttcttcttccaaatctgcaatccatacggttccggttatctcaactgtttgaagaaccttttgtag

Basic information

species Vitis vinifera
transcript Vv00s0181g00120.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0181g00120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G21520.1 (Arabidopsis thaliana), 5'ss of exon 1
CTGTGATTAGGTTCGATGTTCCTCCTCATAGAGCCTATCATTTCTGCCACCAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactttgacatttttctctgaaatcttcttc------ttcttccaaatctgcaatccatacggttccggttatctcaactgtttgaagaacc--ttttgtag---------------
||   || || || |||||  ||||| ||||| |  | |||||||   | |||||||||||  ||  ||||||||||||||| ||||||||  ||||||||||     ||   | | ||||     |||||  |        || |      |||  ||         || |  ||  |  |||| ||||| | ||   ||||||                 
CTACTATGAGATTTGATGTCTCTCCTTATAGAACGCACCATTTCTCTAAGCAGTTCAGGACAGCTCGAAACCCTAATAATTTCCTCAAGGGTCTTAAGTGgtacccttttcttcttgtttcaaatcaatctcttgagtagagttttgttctttctcaaagtttggttttttctttttgcctaact-tttgaggtactgattttgttactgtttcttatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013150|gb|FQ424855.1|FQ424855
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|351039899|gb|FQ464937.1|FQ464937
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|351018924|gb|FQ426423.1|FQ426423
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGGTAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|33404273|gb|CF209900.1|CF209900
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAACTTTCTCAAGGGAGTTAAGTG                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|351047461|gb|FQ454953.1|FQ454953
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|351028547|gb|FQ444828.1|FQ444828
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|351052700|gb|FQ453808.1|FQ453808
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|33404557|gb|CF210184.1|CF210184
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTG                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|352798434|gb|FQ480459.1|FQ480459
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|351024039|gb|FQ423462.1|FQ423462
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
EST: gi|349832306|gb|FQ420867.1|FQ420867
EST:     CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAA-GG-G---A---                         GTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG
genomic: CAGTTCAGGACTCCTTCAAACCCTAATAATTTTCTCAAGGGAGTTAAGTGgtattaactt ... ccttttgtagGTCTCCGGACGGCTCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCG