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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATACATCGATGAGACATGGAGGGAAACTCCCTTGTTGCCTGAAGACCCTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttgttccttggttgaaacgaaattggtaaagactttgtatagagtttgatccatattcatttgttttgtttgggatgtag

Basic information

species Vitis vinifera
transcript Vv00s0153g00050.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393391|gb|EC958598.1|EC958598
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|161718737|gb|FC066344.1|FC066344
EST:     CTTACGAGAGTGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|161707000|gb|FC055108.1|FC055108
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|30131665|gb|CB917004.1|CB917004
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACAACAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|349825020|gb|FQ415567.1|FQ415567
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|22010847|gb|BQ795881.1|BQ795881
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|30131160|gb|CB916499.1|CB916499
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACAACAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|30136757|gb|CB922095.1|CB922095
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACAACAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|161712807|gb|FC062330.1|FC062330
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACAATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAACGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|110372035|gb|EC936177.1|EC936177
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|71868722|gb|DT017777.1|DT017777
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|110379860|gb|EC945082.1|EC945082
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTTTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|110700602|gb|EE077399.1|EE077399
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
EST: gi|27584928|gb|CB007623.1|CB007623
EST:     CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAG                         GTTTTGACAACAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG
genomic: CTTACGAGAGAGCCATGGCTCGCTTCTGGGCCAAATTTGGTGACGATAAGgttgttcttg ... tgggatgtagGTTTTGACATCAATAGTTTGGGGTGTCTTCTTCAAGGAAGGGAAAGAGCAG