1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGAGAGAATATCCGCCAAAGCACTCCAAAAAGCAAATTCCTTTGTGGCTGGATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCGgtacgattacgttcgatgacttttagtttttatagcgttgattgcag
species | Selaginella moellendorffii |
transcript | EFJ37688 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCG GCACCCCTGTACACGGAACCATCTTCTATTATTCEST: gi|169087203|gb|FE493111.1|FE493111
genomic: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCGgtacgattac ... ttgattgcagGCACCCCTGTACACGGAACCATCTTCTATTATTC
EST: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCG GCACCCCTGTACACGGAGCCATCTTCTATCATTCCAGGCACACCTGGAATCEST: gi|169099050|gb|FE501771.1|FE501771
genomic: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCGgtacgattac ... ttgattgcagGCACCCCTGTACACGGAACCATCTTCTATTATTCCAGGCACACCTGGAATC
EST: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCG GCACCCCTGTACACGGAGCCATCTTCTATCATTCCAGGCACACCTGGAATCEST: gi|169025642|gb|FE436555.1|FE436555
genomic: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCGgtacgattac ... ttgattgcagGCACCCCTGTACACGGAACCATCTTCTATTATTCCAGGCACACCTGGAATC
EST: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCG GCACCCCTGTACACGGAGCCATCTTCTATCATTCCAGGCACACCTGG
genomic: GATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCGgtacgattac ... ttgattgcagGCACCCCTGTACACGGAACCATCTTCTATTATTCCAGGCACACCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAGAATATCCGCCAAAGCACTCCAAAAAGCAAATTCCTTTGTGGCTGGATCGCTTCCTTTCTCTCGTGCAAGAGCGTGGATTGATGGGTCCGCTCCGgtacgattacgttcgatgacttttagtttttatagcgttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA