1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCGCTGCAGCAAGCAATATCGCAGCTGGAGGGCGTGATTCAAGCGGCAAACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttcagagtttcatacccatgggcggtaacttccgattttctccacag
species | Selaginella moellendorffii |
transcript | EFJ32436 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169070700|gb|FE480627.1|FE480627
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169065936|gb|FE475384.1|FE475384
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169035439|gb|FE444377.1|FE444377
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169114461|gb|FE516323.1|FE516323
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169113801|gb|FE515362.1|FE515362
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169024125|gb|FE435181.1|FE435181
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: CGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169035440|gb|FE444378.1|FE444378
genomic: CGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGGAGGACTGGCGCTGGTTCTAGCEST: gi|169036432|gb|FE443522.1|FE443522
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGG-AGGACTGGCGCTGGTTCTAGC
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169033927|gb|FE441959.1|FE441959
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169044250|gb|FE452980.1|FE452980
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGATTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169081856|gb|FE490524.1|FE490524
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169020249|gb|FE428272.1|FE428272
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169081855|gb|FE490523.1|FE490523
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCGEST: gi|169081181|gb|FE490783.1|FE490783
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
EST: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAG GCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
genomic: ACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttca ... ttctccacagGCGACCGATCAAGTATTAGCAATTCTGGGAGGACTGGCGCTGGTTCTAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTGCAGCAAGCAATATCGCAGCTGGAGGGCGTGATTCAAGCGGCAAACATCTTCCTCTTGAAGGTTCGCGCCTTGCTTCTCTCGGCTCAACCAGAGgtaagcttcagagtttcatacccatgggcggtaacttccgattttctccacag
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