1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGACGGTGCTGCGGCACTCGTGCTCGTAAGTGGAGCGAAGGCATTGGAGCTTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAGgtattgaatcctttccaatctgaaagagtatgctgaaacactatctgttttgctag
species | Selaginella moellendorffii |
transcript | EFJ29932 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAG TCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATCEST: gi|169066588|gb|FE474148.1|FE474148
genomic: TTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAGgtattgaatc ... gttttgctagTCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATC
EST: TTGGACTGAAAGTTATTGCCAAGATAATTGGCTATGGTGACGCTGAACAG TCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATCEST: gi|169081850|gb|FE487957.1|FE487957
genomic: TTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAGgtattgaatc ... gttttgctagTCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATC
EST: TTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAG TCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATCEST: gi|169041424|gb|FE448982.1|FE448982
genomic: TTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAGgtattgaatc ... gttttgctagTCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATC
EST: TTGGACTGAAAGTTATTGCCAAGATAATTGGCTATGGTGACGCTGAACAG TCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGGGATTCCAAAAGCTATC
genomic: TTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAGgtattgaatc ... gttttgctagTCTCCCGAGCTCTTCACCACGTCACCAGCTCTTGCGATTCCAAAAGCTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGGTGCTGCGGCACTCGTGCTCGTAAGTGGAGCGAAGGCATTGGAGCTTGGACTGAAAGTTATTGGCAAGATAATTGGCTATGGTGACGCTGAACAGgtattgaatcctttccaatctgaaagagtatgctgaaacactatctgttttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA