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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTAGCAGATGCAAGGAGCTCCGAAGCTTTTGTAGCTCTTTGTTTGCTTACAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtattcatactcaggagatgcttttgtgctgaatatttcgttgtgaaag

Basic information

species Selaginella moellendorffii
transcript EFJ25893
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042163|gb|FE454206.1|FE454206
EST:     CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG                         CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: gi|169093899|gb|FE493487.1|FE493487
EST:     CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG                         CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: gi|169047127|gb|FE457208.1|FE457208
EST:     CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG                         CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: gi|169040292|gb|FE448370.1|FE448370
EST:     CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG                         CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: gi|169052239|gb|FE463295.1|FE463295
EST:     CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG                         CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
EST: gi|169029732|gb|FE437403.1|FE437403
EST:     CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACG                         CTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA
genomic: CAGTCACTGGAACGTCTCTGCTAACGCAAAAACTTGGGTTCAGCGACACGgtatgtgtat ... gttgtgaaagCTTGGAGCATTTCTCGCTGGTGCACTTCTAGCGGAGACAAATTATCGCACA