Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGACAATTGAAAGGATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaaaccaaaaagctttcaacgttcttatataagttcccgtgattctctccccag

Basic information

species Selaginella moellendorffii
transcript EFJ22768
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169022717|gb|FE428405.1|FE428405
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169028104|gb|FE435956.1|FE435956
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169096681|gb|FE496811.1|FE496811
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169050285|gb|FE458352.1|FE458352
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169019880|gb|FE426967.1|FE426967
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169081666|gb|FE491320.1|FE491320
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169109250|gb|FE510230.1|FE510230
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169096537|gb|FE499449.1|FE499449
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169082427|gb|FE488989.1|FE488989
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTATTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169075666|gb|FE482052.1|FE482052
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169031591|gb|FE439056.1|FE439056
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169080525|gb|FE488463.1|FE488463
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169102388|gb|FE507080.1|FE507080
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169028103|gb|FE435955.1|FE435955
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169096682|gb|FE496812.1|FE496812
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169022716|gb|FE428404.1|FE428404
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169115682|gb|FE517268.1|FE517268
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169026482|gb|FE434769.1|FE434769
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169045242|gb|FE453555.1|FE453555
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169107250|gb|FE508249.1|FE508249
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169096538|gb|FE499450.1|FE499450
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169083003|gb|FE488525.1|FE488525
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169050286|gb|FE458353.1|FE458353
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169114821|gb|FE516082.1|FE516082
EST:     ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
EST: gi|169080940|gb|FE486109.1|FE486109
EST:     ATGCCAGTGCCCCGCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAG                         ACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT
genomic: ATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 72

GATAGACAATTGAAAGGATGCCAGTGCCCCTCCGGTTTCAAGGGAGACGGTTTTAACACTTGCGAAGgtgagcacaa ... ctctccccagACATCGATGAATGTCGTGAGCGCGTCGCCTGCCAGTGCCCGGATTGTACTTGCAAGAACACTTACGGTAGCTATGACTGCTCCTGCAGCGGTGATCTTCT




<











<


<