1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CCGGCCATCGATTCTCACGTGAAGAATCCCGTTAAAACTTCGATGCCGCAACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAATgtaggcaatttatagctgtatgaaatgttggctaattttcttccttgtcctgtgcag
species | Selaginella moellendorffii |
transcript | EFJ20167 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAAT TGAAGCCAGATCTTGATGTTACTGCTGTCGAAAATGCACCAAATGCTCCTAEST: gi|169028675|gb|FE437282.1|FE437282
genomic: ACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAATgtaggcaatt ... tcctgtgcagTGAAGCCAGATCTTGATGTTACTGCTGTCGAAAATGCACCAAATGCTCCTA
EST: ACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAAT TGAAGCCAGATCTTGATGTTACTGCTGTCGAAAATGCACCAAATGCTCCTAEST: gi|169030547|gb|FE439531.1|FE439531
genomic: ACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAATgtaggcaatt ... tcctgtgcagTGAAGCCAGATCTTGATGTTACTGCTGTCGAAAATGCACCAAATGCTCCTA
EST: ACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAAT TGAAGCCAGATCTTGATGTTACTGCTGTCGAAAATGCACCAAATGCTCCTA
genomic: ACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAATgtaggcaatt ... tcctgtgcagTGAAGCCAGATCTTGATGTTACTGCTGTCGAAAATGCACCAAATGCTCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCCATCGATTCTCACGTGAAGAATCCCGTTAAAACTTCGATGCCGCAACCCTCTGAATCCGTTCTAAAGGAAGTGAGAACCGGCACTGGTACAAAATgtaggcaatttatagctgtatgaaatgttggctaattttcttccttgtcctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA