Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaactatttgctgtacag

Basic information

species Selaginella moellendorffii
transcript EFJ19920
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaactat-ttgctgtacag----------------------------------------------------
||||  ||| | ||| ||| | ||  | |||||||||||||| || || || ||||||||||||||||||||||| || || || ||||| ||||| |||||||  |||   | |  |||  | || |||  |   |  ||| |   ||   ||                                                    
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatg-atgctctcagcata--agaatattgatctaatttatgtcattgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgt----atttatgacataattatacaa---caacattatttgcaact-------atttgctgtacag------------------------------------------------------------------------------
 |||  ||| | ||| ||  |||| || |||||||||||||| | ||| || ||||||||||| ||||||||||| || || |||||||| ||||| |||||    | || |  |   ||| |||     || |||| ||   ||||       || |  | ||  |                                                                              
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgaca-------taatt--atacaacaa-----cattatttgcaactatttgctgtacag-------------------------------
 |||   ||||  || || |||||  | |||||||||||||| | ||| || || |||||||| ||||| ||||| || || |||||||| ||||| ||||||||||  ||        |||||  | ||| |||     |  |  |  | |  ||| |   ||  |                               
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtat--------ttatgacataattatacaacaacattatttgcaactatttgctgtacag-----------------------------------------------------
 |||  ||| |  |||||| | ||  | |||||||||||||| ||||| || || ||||| || ||||| ||||| || || |||||||| ||||| ||||||         | | | || ||  ||         ||||||     |   |||   |                                                        
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtat-------ttatgacataattatacaacaacat-tatttgcaactatttgctgtacag--------------------------------------
 |||   |||| || |||| | ||  | |||||||||||||| ||||| || || |||||||| ||||||||||| || || ||||||||  | || |||||||       | |  ||  || |||      | || | |||  |    ||| |  |  ||                                      
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataatt--atacaacaacattatttgcaactatttgctgtacag------------------------------------
||||   ||||  |||||  ||||  | |||||||||||||| |  || ||||| |||||||| ||||||||||| || || ||||| || ||||| ||||||   | | || |  |  | | |  ||  | | |||  | || | |  |                                         
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaag-acggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcctgacattgttttttttcctag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataatt--atacaacaacatt--atttgcaactatttgctgtacag---------------------------------
||||   ||||  || ||  ||||  | |||||||||||||| |  || ||||| |||||||| ||||||||||| || || ||||| || ||||| ||||||   | | ||    |  | | |||||  ||  | |||  |  |      | | |                                  
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacg-agggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttcttag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattat-ttgcaactatttgctgtacag-----------------------
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | ||   | ||   |    |||| ||||   | ||  ||                             
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttttatgttgcgtatcttgtctaatttacttagcaattgcttttctactag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaact--------atttgctgtacag---------------
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | ||   | ||   |    |   ||||   |        |||| ||   ||                
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaactatttgctgt-acag-------------------------------
|||    ||||   | ||  | || || ||||||||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| ||||| |||||| | ||  ||  | ||||  || |     |   ||   |  || ||  ||                                 
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcatt-cactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatg-acataattatacaac--aacattatttgcaactatttgctgtacag-----------------------------
|||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| || || ||||||| ||   || | ||| | || |  || | ||| |  ||    || || |                                 
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 13
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtattta-tgacataattatacaacaacat----tatttgcaactatttgctgtacag-----------------------------
 ||    || ||||| || ||| |||| || ||||||||||| || || || ||||| ||||| ||||||||||| || ||||| || || ||||| |||||||  | |   |||  | |    | ||||    ||| ||    ||||| |  || |                              
GTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGgtatgaacttgtatatgttttagtctacatggcatatgtgttgatattttcaataaaaacttgtgtaatgtattgtctttcctctag

upper sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: PP1S68_75V6.1 (Physcomitrella patens), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaactatttgctgtacag------------------------------------------------
 ||||| ||||| ||||||||||| ||||| ||  | ||||| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||||||| |  |  | |   | |         ||  || | ||| |||  | ||                                                   
TTTCCTTGATACCCAGCCATTGATTCGGTCTGTATTGGATGGATTCAATGTATGCATCTTTGCCTACGGTCAAACAGGATCTGGAAAGACCTACACCATGgtaatcttctcttttct-tgtctttcttttcctttctactttttaatttaattttatgatacacttttttatggctttacaactttttaacttttttcttg