1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTAGAGGAGCTATTAAAACACCCCCTAACTTCAATTTTCCCGAAGGGTTCGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaattattctttcttatccaatcacggacgcctttctggggttgtgtgtag
species | Selaginella moellendorffii |
transcript | EFJ17214 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGACEST: gi|169019355|gb|FE427665.1|FE427665
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGACEST: gi|169063357|gb|FE472191.1|FE472191
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGACEST: gi|169114901|gb|FE515850.1|FE515850
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGACEST: gi|169071790|gb|FE476647.1|FE476647
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGACEST: gi|169063356|gb|FE472190.1|FE472190
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGACEST: gi|169050265|gb|FE458345.1|FE458345
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
EST: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAG AGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
genomic: CGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaa ... ttgtgtgtagAGAGCAACGCACGTATACTCGGAAGCAAAACGCGTGTACGCTTTCCGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGAGGAGCTATTAAAACACCCCCTAACTTCAATTTTCCCGAAGGGTTCGAGCTTCCAAGCTGTACTTTCGGTTGCTAAACAGTTCAAGCTTCACCAGgtactcaaaattattctttcttatccaatcacggacgcctttctggggttgtgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT