1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGTGGAGAACTGGGAGGAAGACGAGAGCCACAACCCGAATGTGCCTGCCGTGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggttctctctattcttctttgatcatcgttgtgattttctttggaag
species | Selaginella moellendorffii |
transcript | EFJ16610 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCGGTGCTGAATTTACCAGTGGACACCATGGATTTTTACCTTEST: gi|169075837|gb|FE482808.1|FE482808
genomic: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
EST: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTTEST: gi|169072476|gb|FE483872.1|FE483872
genomic: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
EST: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCAGTGCTAAATTTCCCAGTGGCCCCCATGGATTTTTATCTTEST: gi|169100383|gb|FE501180.1|FE501180
genomic: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
EST: GACTCACNNNNNNNGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTTEST: gi|169095670|gb|FE498868.1|FE498868
genomic: GACTCACAAAAAA-GGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
EST: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTTEST: gi|169055996|gb|FE465158.1|FE465158
genomic: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
EST: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTTEST: gi|169058476|gb|FE466373.1|FE466373
genomic: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
EST: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAG GTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
genomic: TGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggtt ... tctttggaagGTTGAGACGTCAGTGCTAAATTTACCAGTGGACACCATGGATTTTTATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGAGAACTGGGAGGAAGACGAGAGCCACAACCCGAATGTGCCTGCCGTGACTCACAAAAAAGGATTAGCGCCATTCGTGTTTGTTCCATTTGAAGAGgtatacggttctctctattcttctttgatcatcgttgtgattttctttggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA