1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGGGAGCTCAAACGGAAACCGAGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatataccggtcttgtcacccgttttttctgcaattcctcgcttttcgcag
species | Selaginella moellendorffii |
transcript | EFJ16507 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAG GCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGGEST: gi|169072619|gb|FE481584.1|FE481584
genomic: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatatacc ... cttttcgcagGCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGG
EST: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAG GCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGGEST: gi|169072620|gb|FE481585.1|FE481585
genomic: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatatacc ... cttttcgcagGCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGG
EST: GCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCNTAA-TGCAACANAG GCTGCTGTTTGAG-AAGGCATCGTTGTTGGTEST: gi|169088884|gb|FE494422.1|FE494422
genomic: GCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTC-TAAATGCAACAAAGgtaatatacc ... cttttcgcagGCTGCTGTT-GAGGAAGGCATCGTTGTTGGT
EST: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAG GCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGGEST: gi|169082801|gb|FE486256.1|FE486256
genomic: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatatacc ... cttttcgcagGCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGG
EST: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAG GCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGGEST: gi|169076090|gb|FE484392.1|FE484392
genomic: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatatacc ... cttttcgcagGCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGG
EST: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAG GCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGG
genomic: AGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatatacc ... cttttcgcagGCTGCTGTTGAGGAAGGCATCGTTGTTGGTGGAGGCACAGCTCTTTTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAGCTCAAACGGAAACCGAGCTGAAAGAGAAGAAGCTTAGAGTGGAGGACGCTCTAAATGCAACAAAGgtaatataccggtcttgtcacccgttttttctgcaattcctcgcttttcgcag
- - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA