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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAAATCCACACTTGGGACACCTTGCGTGGGGGGATGCCTTTGTCGTCACAGCAGACTCAATCAGCATGTTGAGCGAGGCGTGTAGCACAGGgtgagcgtgtgaactgttcgtatccatgctatatttcttcattgatttgttctttcaacttctgcag

Basic information

species Selaginella moellendorffii
transcript EFJ16469
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ16469 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os04g33770.1 (Oryza sativa), 5'ss of exon 8
GTCCAAATCCACACTTGGGACACCTTGCGTGGGGGGATGCCTTTGTCGTCACAGCAGACTCAATCAGCATGTTGAGCGAGGCGTGTAGCACAGGgtgagcgtgtgaactgttcgtatccatgctat-atttcttcattgatttgttctttcaacttctgcag---------------
| || || |||||| | || || ||||| ||||  ||||| |||||| | |||||||||||||| || ||| | || ||||| |||||||| |||||||| | |  | | ||| | |  ||  | | | |  ||  || ||||||     | || |    |                
GACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGgtgagcttat--attattcatctgtatcttttcactattttttttatttgtataaccgaccttcctaacatttctatttacag

upper sequence: EFJ16469 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G026900_T02 (Zea mays), 5'ss of exon 8
GTCCAAATCCACACTTGGGACACCTTGCGTGGGGGGATGCCTTTGTCGTCACAGCAGACTCAATCAGCATGTTGAGCGAGGCGTGTAGCACAGGgtgagcgtgtgaactgttcgtatcca-tgctatatttcttcattgatttgt----tctttcaacttctgcag-----------------
  || || || ||| ||||||| ||||| ||||  ||||| |||||| | ||||||||||| || || ||||| || |||||  |||||||||||| |||   |    | || | | | | |  |  || |    |    ||| |    | ||   | |   ||                   
AACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGGgtaagctgttttcttatttggaacgacttttgcatgttgcaaccattttatgaagttttatgagtgtggctagcttattatcgctacag

upper sequence: EFJ16469 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: Vv06s0080g00830.t01 (Vitis vinifera), 5'ss of exon 8
GTCCAAATCCACACTTGGGACACCTTGCGTGGGGGGATGCCTTTGTCGTCACAGCAGACTCAATCAGCATGTTGAGCGAGGCGTGTAGCACAGGgtgagcgtgtgaactgttcgtatccatgct-----atatttc----ttcattgatttgttctttcaacttctgcag------------------------------------------------------------------------
  |||||||||||| ||||||| || || ||||  ||||| ||||| ||||||||||| ||| | || ||| | || ||||| || ||||||||||  || |  |||   ||     | ||| |     ||| ||         ||||| |  |||||    || | |                                                                          
AACCAAATCCACACATGGGACATCTAGCTTGGGCTGATGCTTTTGTTGTCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGGgtatgcttcagaagaatttacccctatgattgatgataatttggagcatcttgatgttctctttttctttttccttttaggatatgatacttgtttatattctcttattatattgcaatattagttatttcaatttttgttgctgtag