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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGACGTCTGGCTTTGTACCATGGTGTAAGGCCAATCTTTATGGAATTCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttccaaatctcttcattctagtcatagcatggattgatcatctcttttccag

Basic information

species Selaginella moellendorffii
transcript EFJ15169
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169031816|gb|FE440620.1|FE440620
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAA                         AATCGAGGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
EST: gi|169082510|gb|FE489033.1|FE489033
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAA                         AATCGAGGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
EST: gi|169062425|gb|FE469484.1|FE469484
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAA                         AATCGAGGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
EST: gi|169077539|gb|FE485971.1|FE485971
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAA                         AATCGAGGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
EST: gi|169062426|gb|FE469485.1|FE469485
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTC-AA                         AATCGAGGCTTGATCANAGGTGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGG
EST: gi|169079173|gb|FE488658.1|FE488658
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAA                         AATCGAGGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
EST: gi|169079824|gb|FE491233.1|FE491233
EST:     TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAA                         AATCGAGGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG
genomic: TCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttc ... tcttttccagAATCGAAGCTTGATCAAAGGTGGAGAACAGGTTGCTTTGGTCCAAAGTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAAGACGTCTGGCTTTGTACCATGGTGTAAGGCCAATCTTTATGGAATTCTCGGATGATGCCGAAGAAACATTCTCTGGAGCCTTGGGCACTCTCCAAgtaaagtttccaaatctcttcattctagtcatagcatggattgatcatctcttttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA