1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTACGAGCTTTATGTCCGACATCGCGGACGAGTTCAAAATCGTTGTTGTGGAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcctttccctttcgctcatttgctgataccgtaactttccag
species | Selaginella moellendorffii |
transcript | EFJ15122 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTT GATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAAEST: gi|169041828|gb|FE449347.1|FE449347
genomic: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcc ... aactttccagGATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAA
EST: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTT GATGAACTTCCTTAGTGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAAEST: gi|169112514|gb|FE510178.1|FE510178
genomic: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcc ... aactttccagGATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAA
EST: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTT GATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAAEST: gi|169098061|gb|FE496895.1|FE496895
genomic: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcc ... aactttccagGATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAA
EST: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTT GATGAACTTCCTTAGTGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAAEST: gi|169029489|gb|FE438889.1|FE438889
genomic: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcc ... aactttccagGATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAA
EST: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTT GATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAA
genomic: GAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcc ... aactttccagGATGAACTTCCTTAGCGGCATTCTTAGAGAAGAGGGAGGATTCGACTATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACGAGCTTTATGTCCGACATCGCGGACGAGTTCAAAATCGTTGTTGTGGAAGCAATTCGGTCGCTTTGCCTAAAGTTTCCACAAAAATATCGGTCTTTgtaagtgtcctttccctttcgctcatttgctgataccgtaactttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA