1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGATCTCATTGAAGAAATCATGATCGGAGAAGATCGACTTATTCGTTTCTCCGGCGTAGAAATGGGAGAAGCGTGCACAATAGTTCTCCGGGGTGCAAGgtatgcattgcctctttgttctttgtgaatgctaactttttggttttacttttttgtag
species | Selaginella moellendorffii |
transcript | EFJ13624 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CGGCGTAGAAATGGGAGAAGCGTGCACAATAGTTCTCCGGGGTGCAAG CACTCATGTCTTGGACGAAGCTGAAAGGTCTTTGCATGATGCACTATGCGTEST: gi|169075816|gb|FE483320.1|FE483320
genomic: CGGCGTAGAAATGGGAGAAGCGTGCACAATAGTTCTCCGGGGTGCAAGgtatgcattg ... ttttttgtagCACTCATGTCTTGGACGAAGCTGAAAGGTCTTTGCATGATGCACTATGCGT
EST: TCTGGCGTAGAAATGGGAGAAGCGTGCACAATAGTTCTCCGGGGTGCAAG CACTCATGTCTTGGACGAAGCTGAAAGGTCCTTGCATGATGCACTATGCGT
genomic: TCCGGCGTAGAAATGGGAGAAGCGTGCACAATAGTTCTCCGGGGTGCAAGgtatgcattg ... ttttttgtagCACTCATGTCTTGGACGAAGCTGAAAGGTCTTTGCATGATGCACTATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATCTCATTGAAGAAATCATGATCGGAGAAGATCGACTTATTCGTTTCTCCGGCGTAGAAATGGGAGAAGCGTGCACAATAGTTCTCCGGGGTGCAAGgtatgcattgcctctttgttctttgtgaatgctaactttttggttttacttttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC