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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag

Basic information

species Selaginella moellendorffii
transcript EFJ12333
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactat-ttgctgtacag----------------------------------------------------
||||  ||| | ||| ||| | ||  | |||||||||||||| || || || ||||||||||||||||||||||| || || || ||||| ||||| |||||||  |||   |     | || || |||  |   |  ||| |   ||   ||                                                    
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatg-atgctct-cagcataagaatattgatctaatttatgtcattgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtattta---tgac--atattatacaa---caacattatttgcaact-------atttgctgtacag------------------------------------------------------------------------------
 |||  ||| | ||| ||  |||| || |||||||||||||| | ||| || ||||||||||| ||||||||||| || || |||||||| ||||| |||||| | |   | ||  ||||| |||     || |||| ||   ||||       || |  | ||  |                                                                              
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgac----------atattatacaacaa-----cattatttgcaactatttgctgtacag-------------------------------
 |||   ||||  || || |||||  | |||||||||||||| | ||| || || |||||||| ||||| ||||| || || |||||||| ||||| ||||||||||  ||          ||   | ||| |||     |  |  |  | |  ||| |   ||  |                               
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacat------tatttgcaactatttgctgtacag---------------------------------------------------------
 |||  ||| |  |||||| | ||  | |||||||||||||| ||||| || || ||||| || ||||| ||||| || || |||||||| ||||| ||||||    |||         ||| |||||      | |||    |  |||||    |||                                                         
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgc-tgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtat----ttatga----catattatacaacaacat-tatttgcaactatttgctgtacag--------------------------------------
 |||   |||| || |||| | ||  | |||||||||||||| ||||| || || |||||||| ||||||||||| || || ||||||||  | || |||||||     ||| |    |  | |||      | || | |||  |    ||| |  |  ||                                      
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag---------------------------------------
||||   ||||  |||||  ||||  | |||||||||||||| |  || ||||| |||||||| ||||||||||| || || ||||| || ||||| ||||||   | | || |    | || |  |   |       || | |  ||   |                                       
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaag-acggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcctgacattgttttttttcctag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag--------------------------------------
||||   ||||  || ||  ||||  | |||||||||||||| |  || ||||| |||||||| ||||||||||| || || ||||| || ||||| ||||||   | | ||     |  || ||||   ||   |   || |        |                                      
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacg-agggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttcttag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag---------------------------
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | || |  |  ||     || | ||   |  | |  |||  |                            
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatat-tcgtttaatgcttttttatgttgc-gtatcttgtctaatttacttagcaattgcttttctactag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag-------------------------
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | ||    |  ||     ||  |      ||| |    ||                            
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatat-ccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgt-acag-------------------------------
|||    ||||   | ||  | || || ||||||||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| ||||| |||||| | ||    || ||||  || |     |   ||   |  || ||  ||                                 
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactcattcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtattta------tgacatattatacaacaacattatt--tgcaactatttgctgtacag-------------------------
|||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| || || ||||||| ||      | |  | | || ||| ||   | ||   |  | || |   |||||                           
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 13
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtat----ttatg-acatattatacaacaacat-tatttgcaactatttgctgtacag-----------------------------
 ||    || ||||| || ||| |||| || ||||||||||| || || || ||||| ||||| ||||||||||| || ||||| || || ||||| |||||||    || |  |  | |||  | |||     ||| ||    ||||| |  || |                              
GTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGgtatgaacttgtatatgttttagtctacatggcatatgtgttgatattttcaataaaaacttgtgtaatgtattgtctttcctctag

upper sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: PP1S68_75V6.1 (Physcomitrella patens), 5'ss of exon 14
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag------------------------------------------------
 ||||| ||||| ||||||||||| ||||| ||  | ||||| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||||||| |  |  | | |  |         ||  || | ||| |||  | ||                                                   
TTTCCTTGATACCCAGCCATTGATTCGGTCTGTATTGGATGGATTCAATGTATGCATCTTTGCCTACGGTCAAACAGGATCTGGAAAGACCTACACCATGgtaatcttctcttttcttgtctttcttttcctttctactttttaatttaattttatgatacacttttttatggctttacaactttttaacttttttcttg