1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGTTCCAGTTCTTCATTGGTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttctatccggccgtgatgttgttctctaagattgtgctcgctcttgcag
species | Selaginella moellendorffii |
transcript | EFJ12166 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAG ATGGTGGCGTGTGGAGTGCTGCTGATCGTGATGGCTGTTGGCAACTTCGCGEST: gi|169056974|gb|FE466201.1|FE466201
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGGCAACTTCGCG
EST: GTTTCAAACTGCTTAAAACTCCNATGGTGGACAAAGATTACGATTGGCAA ATGGTGGCGTGTGAAGTGCTGCTGATCGTGATGGCTGTTGGEST: gi|169056973|gb|FE466200.1|FE466200
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGG
EST: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAG ATGGTGGCGTGTGGAGTGCTGCTGATCGTGATGGCTGTTGGCAACTTCGCGEST: gi|169064281|gb|FE471844.1|FE471844
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGGCAACTTCGCG
EST: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAG ATGGTGGCGTGTGGAGTGCTGCTGATCGTGATGGCTGTTGGCAACTTCGCGEST: gi|169020374|gb|FE431621.1|FE431621
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGGCAACTTCGCG
EST: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAG ATGGTGGCGTGTGGAGTGCTGCTGATCGTGATGGCTGTTGGCAACTTCGCGEST: gi|169031683|gb|FE437484.1|FE437484
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGGCAACTTCGCG
EST: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAG ATGGTGGCGTGTGGAGTGCTGCTGATCGTGATGGCTGTTGGCAACTTCGCGEST: gi|169053303|gb|FE462578.1|FE462578
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGGCAACTTCGCG
EST: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAG ATGGTGGCGTGTGGAGTGCTGCTGATCGTGATGGCTGTTGGCAACTTCGCG
genomic: GTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttc ... gctcttgcagATGGTGGCGTGTGGAGTGCTGCTAATCGTGATGGCTGTTGGCAACTTCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTCCAGTTCTTCATTGGTTTCAAACTGCTTAAAACTCCAATGGTGGACAAAGATTACGATTGGCAGgcaagtcttctatccggccgtgatgttgttctctaagattgtgctcgctcttgcag
- - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - GGTGGA