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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaagaacaatatcttccgagctcattatctggcgtaacacctgcag

Basic information

species Selaginella moellendorffii
transcript EFJ10973
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt--tcctctaagaacaatatcttccgagct-cattatctg-----gcgtaacacctgcag-------------------------------
| | |||||  | ||  || ||||||| |||||  |  |||| |||||||| |||||||| |||||||| || ||||| ||||| || ||||||||||| ||  ||| ||  |  || ||    ||  |   |  || |  ||| | |        ||||||  |  |                                
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt

upper sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaagaacaata--tcttccgagctcattatctggcgtaa-cacctg-cag------------------------------------
  | |||||  | ||  || ||||||| || ||  |  |||| |||||||| |||||||| |||||||| || |||||| |||| || ||||||||||| ||| |||         || |   | |  |||    |    ||| | |    |   ||  || ||                                     
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg

upper sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaagaacaata--tcttccgagctcattatctggcgtaacacctgcag-------------------------------------
| | |||||  | ||  || ||||||| || ||  |  |||| |||||||| |||||||| || ||||| || |||||| |||| || ||||||||||| ||| ||| |       || |   | |  | |    |    ||| | |    |        ||                                      
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcacaaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169045259|gb|FE453572.1|FE453572
EST:     CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACA                         GTTGGGATGTCTATAGATCCGCAGCTGTTTTTAGCCAAGTCCAACATCATC
genomic: CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt ... acacctgcagGTTGGGATGTCTATAGATCCGCAGCTGTTTTTAGCCAAGTCCAACATCATC
EST: gi|169052985|gb|FE460700.1|FE460700
EST:     CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACA                         GTTGGGATGTCTATAGATCCGCAGCTGTTTTTAGCCAAGTCCAACATCATC
genomic: CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt ... acacctgcagGTTGGGATGTCTATAGATCCGCAGCTGTTTTTAGCCAAGTCCAACATCATC
EST: gi|169059437|gb|FE467540.1|FE467540
EST:     CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACA                         GTTGGGATGTCTATAGATCCGCAGCTG
genomic: CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt ... acacctgcagGTTGGGATGTCTATAGATCCGCAGCTG
EST: gi|169064218|gb|FE471573.1|FE471573
EST:     CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACA                         GTTGGGATGTCTATAG
genomic: CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt ... acacctgcagGTTGGGATGTCTATAG
EST: gi|169022442|gb|FE430795.1|FE430795
EST:     CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACA                         GTTGGGATGTCTATAGATCCGCAGCTGTTTTTAGCCAAGTCCAACATCATC
genomic: CCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt ... acacctgcagGTTGGGATGTCTATAGATCCGCAGCTGTTTTTAGCCAAGTCCAACATCATC