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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAGAAACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaattcgtttttaaaacttcatgtgcgttatcaaacttggactccgttttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ09619
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169113523|gb|FE515058.1|FE515058
EST:     AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA                         TANAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: gi|169035949|gb|FE442417.1|FE442417
EST:     AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA                         TAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: gi|169113522|gb|FE515057.1|FE515057
EST:     AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA                         TAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: gi|169052850|gb|FE461215.1|FE461215
EST:     AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACA                         TAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: gi|169094267|gb|FE495545.1|FE495545
EST:     AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGGCTGGGTGACA                         TAAAAGATCCACCAGATTTTATCTATTTACTGGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT
EST: gi|169043154|gb|FE454068.1|FE454068
EST:     AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGGCTGGGTGACA                         TAAAAGATCCACCAGATTTTATCTATTTACTGGATAACTGTCCTCACGACT
genomic: AACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 6

GTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAGAAACTGGCCAACGCGGCATAATCTCCAGGGGTTGGGGAGGCCTGGGTGACAgtaagtaatt ... cgttttgcagTAAAAGATCCACCAGATTTTATCTATTTACTTGATAACTGTCCTCACGACTGGCTTTTTCCACAATGCGCTGGAGTG




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