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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTGCAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaaaaacaatatcttccgagctcattatctggcgtaacacctgcag

Basic information

species Selaginella moellendorffii
transcript EFJ07595
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07595 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 11
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTGCAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtt--tcctctaa---aaacaatatctt--ccgagctcattatctg-gcgtaacacctgcag-------------------------------
| | |||||  | ||  || ||||||| |||||  |  | || |||||||| |||||||| |||||||| || ||||| ||||| || ||||||||||| ||  ||| ||  |  || ||   |||   || |||    |   |   ||| |    ||||||  |  |                                
TTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGgtttgtgcttaatattcaaattcaaaagttaacttagttgtattgtatatttacatgtaacatatatatattttatactttgtcaatatgctgttcaatt

upper sequence: EFJ07595 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTGCAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaaaaacaata--tcttccgagctcattatctggcgtaa-cacctg-cag------------------------------------
  | |||||  | ||  || ||||||| || ||  |  | || |||||||| |||||||| |||||||| || |||||| |||| || ||||||||||| ||| |||         ||||   | |  |||    |    ||| | |    |   ||  || ||                                     
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg

upper sequence: EFJ07595 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 5'ss of exon 11
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTGCAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcct-----ctaaaaacaa-tatcttccgagctcattatctggcgta-acacctgcag--------------------------------
| | ||||| || ||  |  |||| || || ||  |  ||||||||||||| ||||| || ||||| || ||||||||  ||||||| ||||| ||||| |||| | ||   ||      | |||| |  |        || | | | | |  | |  | |    |||                                
TTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatttgtgaactaggtcttgaaaatagctgatcgataagtttactgttttccttggagatggtcagaagttattataaataggatattaaggaatata