Sequence
atgc intronic sequence ATGC exonic sequenceCTGAAAGAGATGCGATTCTTCTCAAAGCTGCTGTTTCCCTCGGTTCGAGACACCACCTTCTTCGAGAGCTGCGGCGTTGCCGACCTTATCACAACATGCCgtaagttttccatcgttttttctccatcgtaatcttgttttagccggttttaatcttctcgtgacttttgtgcttgtccag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ07277 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ07277 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA19G23190.1 (Glycine max), 5'ss of exon 9
CTGAAAGAGATGCGATTCTTCTCAAAGCTGCTGTTTCCCTCGGTTCGAGACACCACCTTCTTCGAGAGCTGCGGCGTTGCCGACCTTATCACAACATGCCgtaagttttccatcgttttttctccatcgtaatcttgttt--tagccggttttaatctt-ctcgtgacttttgtgcttgtc-cag
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CTGAAAGAGATGAGGGCATTTTCAAAGATGTGGTTTCCATCTGTTAAGGACAACACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCAgtaaggacactgattaattgacttcaccttatttttcattggtcatatatcctggtttcatttaaaaccatattatttgtggcag
upper sequence: EFJ07277 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GLYMA19G07410.1 (Glycine max), 5'ss of exon 8
CTGAAAGAGATGCGATTCTTCTCAAAGCTGCTGTTTCCCTCGGTTCGAGACACCACCTTCTTCGAGAGCTGCGGCGTTGCCGACCTTATCACAACATGCCgtaagttttcca-tcgttttttctccatcgtaatcttgttttagccggttttaatcttctcgtgacttttgtgcttgtccag
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CTTAGAGAAATGAAGGCATTTTCAAAGTTGTTGTTTCCATCTGTTAAGGACAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagctaattagtttcaccctatttt--tcattgcttatcttttgaaaaccaaattgt--ctatggcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169064945|gb|FE475017.1|FE475017EST: CACCACCTTCTTCGAGAGCTGCGGCGTTGCCGACCTTATCACAACATGCC TTGGAGGTCGCAACAGAAGAGTGGCCGATGCATTCGCCAGGAACAAAGGAA
genomic: CACCACCTTCTTCGAGAGCTGCGGCGTTGCCGACCTTATCACAACATGCCgtaagttttc ... gcttgtccagTTGGAGGTCGCAACAGAAGAGTGGCCGATGCATTCGCCAGGAACAAAGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAAAGAGATGCGATTCTTCTCAAAGCTGCTGTTTCCCTCGGTTCGAGACACCACCTTCTTCGAGAGCTGCGGCGTTGCCGACCTTATCACAACATGCCgtaagttttccatcgttttttctccatcgtaatcttgttttagccggttttaatcttctcgtgacttttgtgcttgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC