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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTGGTCACGATTGGCTGATTTGAATGTGCATGAAGGGAAATTACTTGGATGCTCTTTCAACCAAAGTTGTGTGGGAGTATGGGTCGTGGACTTACCTgtaagcgtcttttgcatctattattgtgtatataatatatgtttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ05569
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G160702_T01 (Zea mays), 5'ss of exon 8
CAACTGGTCACGATTGGCTGATTTGAATGTGCATGAAGGGAAATTACTTGGATGCTCTTTCAACCAAAGTTGTGTGGGAGTATGGGTCGTGGACTTACCTgta----agcgtcttttgcatctattattgtg-tatataatatatgtttgcag-----------------------------------------
    |||||  || | || ||||||||||| ||||| || ||| | ||||| || |||||||| ||||||||||| ||| ||||||| || ||  |  | |||     || ||   | ||||| | |   || |   | |  |    ||| |                                          
GGGATGGTCTAGACTTGCCGATTTGAATGTCCATGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttggcttcggctacatctgtaacactgatcagttacgttcaattgaatttttttttcttgaatatactaataaagtaatcaattgacag

upper sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 9
lower sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
CAACTGGTCACGATTGGCTGATTTGAATGTGCATGAAGGGAAATTACTTGGATGCTCTTTCAACCAAAGTTGTGTGGGAGTATGGGTCGTGGACTTACCTgtaagcgtcttttgcatctattattgtgtatataatatatgtttgcag---------------------------------------------
    |||||  || | |||||||||||||| || || || ||| | ||||| || |||||||| ||||||||||| ||| ||||||| || ||  |  | |||   ||    | || |||   ||||     | || | | ||                                                  
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgta--tgttgacttcagctacatttgtaacactgatctgttttccttcttgccttttaatctaataagtaataacaaagtaatcaattggcag