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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAGgtaactgtttcagagcttcttttttgtcctgagtgcgctttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ38878
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38878 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: LOC_Os10g32960.1 (Oryza sativa), 5'ss of exon 8
ATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAGgtaactgtttcagagcttcttttttgtcctgagtgcgctttgtag---------------------------------------------------------------------------------------------------------------------------------------
|||||||||||||||||||||||||| |||||| || |    || || ||  |||||||||| || || || ||||| |  |||||||||  ||||  |          | | | | ||  ||  ||                                                                                                                                            
ATGATGGAATGGTGGTATCAATCTGCTGAGGAAAGAATGTCAGCTCCGACTGTATATCCCCCACCCCCTCCTCCACCTCTGCCAAAGgtacatgttatatgctagtcaatatatgcagaaagcagttacccttgtctgaaatctcaatttgcagtaacatggtgaacagaactctttgttttgccactgtgcagttggatatattttgtggtttaatagttctttatatgactactgtttgatttgagcgtctacttctttcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056507|gb|FE464915.1|FE464915
EST:     TCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG                         GTGGCACCAAACGGCATCCCTCTACCGGAAAGTGTTAGAACTTGTCCACTT
genomic: TCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAGgtaactgttt ... cgctttgtagGTGGCACCAAACGGTATCCCTCTACCGGAAAGCGTTAGAACTTGTCCACTT