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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAGgtcagtgaggctctttttcacgcaagctttggtttgagcatgtctttcatatag

Basic information

species Selaginella moellendorffii
transcript EFJ36429
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36429 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: LOC_Os03g58040.3 (Oryza sativa), 5'ss of exon 9
ATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAGgtcagtgag-gctc---tttttcacgcaagctttggtttgagcatgtctttcatatag-----------------------------------------------------
||  |  | ||||||||| |  |  |  | ||||||||| | || ||||| || ||||||||||||||||||||||| ||||| ||||| ||| |  || |    |      || |  ||  |  | |  ||||    ||   ||                                                     
ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAGgtaagttactgcacaatctccctgtgctaaattcagagtaaaaatgtaaagcagtcaggttaagcaagagactgatgcatgaagctgctgctgttcttgtggtttgttcag

upper sequence: EFJ36429 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GRMZM2G178415_T05 (Zea mays), 5'ss of exon 9
ATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAGgtcagtgag--gctctttttcac-gcaagctttggtttgagcatgtctttcatatag----------------------------------------------
||  |  | ||||||||| || |  |  | || |||||  |||| ||||| || || |||||||||||||||||||| |||||||| ||||||     ||||||   ||| |  |||  || ||     | |   | ||||                                                 
ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTGGTGGCGTCACAGTGAGCTACTTCGAGTGGGTACAAgtcagtagctcgctcttgcccactgtgagccgtgcttcct-tacggactacatagcactgtgaatttaacccgtggacaccacacgtgctttcgtctgttcag

upper sequence: EFJ36429 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA19G28770.1 (Glycine max), 5'ss of exon 8
ATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAGgtcagtgaggctctttttcacgcaagctttggtttgagcatgtctttcatatag----------------------------------------------
||| |   |||||||||  |  || |  | |||||||| || |||||||||||||| || ||||| |||||||| || ||||| ||||| | |     | | ||| | | |     || |||    || |  ||  ||||                                               
ATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGgtaactattaatttatttaatgaactacatgatttccatatatgctttttatatttaggagtaaaataattgaaaaccaacagaggttgggtctggtgga