1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCCGTCGAGAGTGACTGCATATCCGAGCTCCAGCAAGAAAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAGgtacttttctttgcactgtgatcactatatcggctggaaactcttttag
species | Selaginella moellendorffii |
transcript | EFJ35260 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAG GAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGTTCTTCCGAEST: gi|169070078|gb|FE476547.1|FE476547
genomic: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAGgtacttttct ... actcttttagGAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGCTCTTCCGA
EST: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAG GAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGCTCTTCCGAEST: gi|169030768|gb|FE440883.1|FE440883
genomic: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAGgtacttttct ... actcttttagGAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGCTCTTCCGA
EST: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAG GAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGCTCTTCCGAEST: gi|169020115|gb|FE431076.1|FE431076
genomic: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAGgtacttttct ... actcttttagGAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGCTCTTCCGA
EST: AGCTGCCGA-AAAAACTGGGACAAGCTGGAAGCTGAAGTGAAAGAA-GAG GAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTEST: gi|169020114|gb|FE431075.1|FE431075
genomic: AGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAA-GAAAGAGgtacttttct ... actcttttagGAGAAGGACGAGAAACTGGAGGGTGACGCTGCACT
EST: AAGCTGCCGNNNNNNNCTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAG GAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTTAACAAGCTCTTCCGA
genomic: AAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAGgtacttttct ... actcttttagGAGAAGGACGAGAAACTGGAGGGTGACGCTGCACTCAACAAGCTCTTCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGTCGAGAGTGACTGCATATCCGAGCTCCAGCAAGAAAGCTGCCGAGAAAAACTGGGACAAGCTGGAAGCTGAAGTGAAGAAAGAGgtacttttctttgcactgtgatcactatatcggctggaaactcttttag
- - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA