1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGTGATGCTCCTAAGGACGAAGTCATTGCGGCAGCGGAGCGTAACGTTCTCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtcttgtttttaatcaacgtttcttgatcctttgcatcacag
species | Selaginella moellendorffii |
transcript | EFJ34464 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169078969|gb|FE489689.1|FE489689
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169078280|gb|FE488883.1|FE488883
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169067077|gb|FE476015.1|FE476015
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169059536|gb|FE468562.1|FE468562
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169067063|gb|FE476014.1|FE476014
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169078279|gb|FE488882.1|FE488882
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTCEST: gi|169078970|gb|FE489690.1|FE489690
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
EST: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAG GGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
genomic: TCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtctt ... tgcatcacagGGACATATTTGGAGAACAGGATACAAAAACGGTGAACTCAAAGGCCAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGATGCTCCTAAGGACGAAGTCATTGCGGCAGCGGAGCGTAACGTTCTCGCCATGATTGCTGCCGATCGCAAAGTTACAGCCCTCAAACAATTGCAGgtctggtcttgtttttaatcaacgtttcttgatcctttgcatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG