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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaattttcttttgccatcttctactatctttttttcctgattttgatacaatctgtatgcag

Basic information

species Selaginella moellendorffii
transcript EFJ30498
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 8
CACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaattttcttttgc--catcttctactatctt-tttttcctgattttgat---acaatctgtatgcag---------------------------
    ||  |||| || || || ||  |||| |||||||| |  |  || |||||||||||||||||||| || ||||| ||||||||  | | |||| ||||| |   | ||    |||  ||| |   |  || |   || |||  | |   ||   | | |   || ||||                           
GGAGGTTCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGGTACTGGGGAGAGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtatttgttattgcagtgcagcatttatcagaatgtcacttgtcccaagtaccattgaaaagttcataggcaggtaaagtcaattgtagtgtaattgtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169058050|gb|FE463958.1|FE463958
EST:     AGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169067534|gb|FE475263.1|FE475263
EST:     GGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: GGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169106825|gb|FE508773.1|FE508773
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169066459|gb|FE474682.1|FE474682
EST:     TTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: TTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169058051|gb|FE463959.1|FE463959
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169065717|gb|FE476205.1|FE476205
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169045643|gb|FE452604.1|FE452604
EST:     ATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: ATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169046057|gb|FE453954.1|FE453954
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169035664|gb|FE445434.1|FE445434
EST:     ATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: ATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169059961|gb|FE467323.1|FE467323
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169112479|gb|FE512756.1|FE512756
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169088621|gb|FE495979.1|FE495979
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169056996|gb|FE466223.1|FE466223
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169042322|gb|FE452870.1|FE452870
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169036857|gb|FE444974.1|FE444974
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169066183|gb|FE475683.1|FE475683
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169073090|gb|FE484143.1|FE484143
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169019369|gb|FE427679.1|FE427679
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169088622|gb|FE495980.1|FE495980
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169067159|gb|FE474927.1|FE474927
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169035665|gb|FE445435.1|FE445435
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169044151|gb|FE452153.1|FE452153
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169029047|gb|FE437550.1|FE437550
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169035271|gb|FE443741.1|FE443741
EST:     ATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: ATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169078707|gb|FE486515.1|FE486515
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169059960|gb|FE467322.1|FE467322
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169078708|gb|FE486516.1|FE486516
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169020173|gb|FE428235.1|FE428235
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169106600|gb|FE504635.1|FE504635
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169067160|gb|FE474928.1|FE474928
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169066245|gb|FE475199.1|FE475199
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169067533|gb|FE475262.1|FE475262
EST:     GGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: GGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169106824|gb|FE508772.1|FE508772
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169029665|gb|FE437336.1|FE437336
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169097503|gb|FE497945.1|FE497945
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169111757|gb|FE511956.1|FE511956
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169067096|gb|FE474474.1|FE474474
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169069054|gb|FE477746.1|FE477746
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169037822|gb|FE442533.1|FE442533
EST:     ATTTCGAGATGACAANCATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: ATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169054114|gb|FE462349.1|FE462349
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169044380|gb|FE453318.1|FE453318
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169100332|gb|FE501129.1|FE501129
EST:     TTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: TTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
EST: gi|169066182|gb|FE475682.1|FE475682
EST:     AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAG                         ACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT
genomic: AGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 47

CACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaatt ... ctgtatgcagACGGTGGAAGAGCTCTACAAAGTGGCCTCGATATCTCTTTCTCCAAATGTTGTTGGCCAGATCATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTGGCTATTTCGAGATGACAAACATCCATCCACAGgtaatgaattttcttttgccatcttctactatctttttttcctgattttgatacaatctgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG