1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGAAGAGATTTTAAACGTGCACGTCACAAAGAAGGGCTTGCCTCTTTCGAAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgtagattgcaaatattttggcttacgaccctgtatacgcag
species | Selaginella moellendorffii |
transcript | EFJ30338 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGG AGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTAGAGAEST: gi|169051491|gb|FE459726.1|FE459726
genomic: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgt ... gtatacgcagAGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTAGAGA
EST: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGG AGCGGATCTTGCAAACCTTTTGTAA-CGAG-CTGCTCTACTAGCTGGTEST: gi|169063428|gb|FE471430.1|FE471430
genomic: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgt ... gtatacgcagAGCGGATCTTGCAAACCTT--GTAAACGAGGCTGCTCTACTAGCTGGT
EST: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGG AGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTAGAGAEST: gi|169047420|gb|FE455629.1|FE455629
genomic: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgt ... gtatacgcagAGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTAGAGA
EST: AAGGATGTCAACCTGAATGTTGTTGCCGGGGCTACCTCGGGTTTTACGGG AGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTEST: gi|169064596|gb|FE471327.1|FE471327
genomic: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgt ... gtatacgcagAGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGT
EST: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGG AGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTAGAGA
genomic: AAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgt ... gtatacgcagAGCGGATCTTGCAAACCTTGTAAACGAGGCTGCTCTACTAGCTGGTAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGAGATTTTAAACGTGCACGTCACAAAGAAGGGCTTGCCTCTTTCGAAGGACGTCAACCTGAATGCTGTTGCCGGGGCTACCTCGGGTTTTACGGGgtaagagtgtagattgcaaatattttggcttacgaccctgtatacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT