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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACAGTACTATTTGATGGACTGTATCATCCAAGTGTTCCCCGATGAGTTTCACCTGCAAACTTTAGAATCTCTTCTAGGGGCATGCCCCCAGCTACAGgtttgttatttcttttactatgattgctttacaactaactgtggtatgcaatcttag

Basic information

species Selaginella moellendorffii
transcript EFJ27365
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ27365 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 8
CGCACAGTACTATTTGATGGACTGTATCATCCAAGTGTTCCCCGATGAGTTTCACCTGCAAACTTTAGAATCTCTTCTAGGGGCATGCCCCCAGCTACAGgtttgttatttc-----ttttactatgattgctttacaactaactgtggtatgca-atcttag-------------------------------------
 || ||||  || |||||||| ||||| || ||||| ||||||||||||| |||| |||||||| | ||     |  | || || | ||| || || |||||  || |  |      ||||  | |  |   |||  |     |  |  | |  | || ||                                       
GGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGTTGGGTGCTTACCCTCAACTTCAGgtcagtgaacttgcacatttttttgtattacttttggaggatgccttaatgtatatatgttttttctccttccaaaccatgaaagttcatgttagtgaac

upper sequence: EFJ27365 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S313_104V6.1 (Physcomitrella patens), 5'ss of exon 8
CGCACAGTACTATTTGATGGACTGTATCATCCAAGTGTTCCCCGATGAGTTTCACCTGCAAACTTTAGAATCTCTTCTAGGGGCATGCCCCCAGCTACAGgtttgttatttcttttactatgattgcttta-------caactaactgtggtatgca-atcttag-----------------------------------
||| |||||||| ||||||||||| |||||||| ||||| || || || || || || |||||||| ||  |||||||| | |||||||| ||||||||||| ||   || |  ||    ||     || |       | | ||  | || |    | || | ||                                   
CGCGCAGTACTACTTGATGGACTGCATCATCCAGGTGTTTCCAGACGATTTCCATCTTCAAACTTTGGAGACTCTTCTAAGTGCATGCCCTCAGCTACAGgtatgggtttccagttggattggcgctttcaggtgcagcgattagttttgttggaaagatatgagcacggaaaacctggttttagttgatgagggggaag