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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGCTATGCTTGAAAAGCATCTGAAGGCAACCGGTGGAAGAGTCTATACCCGTTTTCCTCCTGAACCAAATGGTTACTTACACATTGGACATGCTAAGgtaagtgtcttttgtgtcattagtgtcttgattctgtttggcag

Basic information

species Selaginella moellendorffii
transcript EFJ20630
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20630 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S43_166V6.1 (Physcomitrella patens), 5'ss of exon 10
GAGAGCTATGCTTGAAAAGCATCTGAAGGCAACCGGTGGAAGAGTCTATACCCGTTTTCCTCCTGAACCAAATGGTTACTTACACATTGGACATGCTAAGgtaag--tgtcttttgt-----gtcattagtgtctt--gattctgtttggcag----------------------------------------------------------------------------------------------------------------------------------
  | || | ||| || || ||||||||||  |||||||| |   |    || || |||||||| ||||||||||| |||||||||||||| ||||| |||||||    | |||| ||        ||  ||  |||  ||     |||||  |                                                                                                                                  
TCGGGCCAGGCTGGAGAAACATCTGAAGGAGACCGGTGGCAAGTTTGTCACTCGATTTCCTCCAGAACCAAATGGATACTTACACATTGGTCATGCCAAGgtaaccccggctttagtcagttacgatgggtaacttgtgaccgcttttggaggagtgccttagtaaatagagcgtagaatggttttggtccaaacttggtgagggtgtgttaggttttcgtacgtattagacaattttcggagtgaaaaactaatcgtgtatcatgttggcttatttgtgcag