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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtgaacaattgcctgcgactatagtaagttgtttacctttcttcactttgacag

Basic information

species Selaginella moellendorffii
transcript EFJ20056
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 7
GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtggg--tgaacaatt-gcctgcgactatagtaagttgtttacctttcttcactt---tgacag-----------
||| | ||||| || ||||| || | ||||||||| |||||||||  ||||||||| || || || ||||| || ||||| ||||||||||| ||| | |||  |  | |  | || ||||  |||  |  | ||   |||    |||   | ||   |||  |           
GAGCTATCTGCAAAGACCAAGATATTCTTTTCCACTGCTGTGGCATTATGGGATGCTGATTTCTATGTCAAGGTGGATGATGATGTTCATGTCAACCTTGgtaagctttattatttagcctttgaccttgatgagagatttgttattcagtaattaactgatgggagtgatgcag

upper sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 7
GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtgaacaattgcct----gcgactatag----taagttg---tttacctttcttcactt----tgacag--------
||  | || || || || || || | ||| || ||||| || |  |  |||||||| |||||||| || || || ||||| ||||| ||||| |||||||||||||  |   ||   |    | | | || |    || ||||   | ||   |    |||||    |||||         
GAACTCTCAGCTAAGACAAAGATTTTCTTCTCTACAGCAGTTGGTATTTGGGATGCTGACTTTTATGTGAAGGTTGATGATGATGTGCATGTGAACTTAGgtgggtatattttttttttcacgtgccgattggccttatgttgaaatctataataacccacttcatgtgacaacataacag

upper sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GRMZM2G013079_T01 (Zea mays), 5'ss of exon 7
GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtgaacaattgcctgcgactatagtaagttgttt---acctttcttcactttgacag---------------------
||  | || || || || ||||| | ||| || || ||| | |  |  |||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||  ||     |     |  || ||  ||  |  | |   |  |   ||   |||    |                     
GAACTCTCAGCTAAGACAAAAATATTCTTCTCTACTGCTCTTGGCATCTGGGATGCTGACTTCTACGTCAAGGTTGATGATGATGTGCATGTAAACTTAGgtgcttgtctcttccttagacacaattttacttcctcttgaatttcagttttgtttactggtgcatgcatatgaccaaacag

upper sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 7
GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtga-------acaattgcctgcgactatagtaagttgtt-tacctttcttcactttgacag---------------------------------------------------------
|| |||||||| || || ||||| | |||||||||||| || |||||||||||||| || || || |||||||| ||||| ||||| ||||| || ||||||  |||        | | ||     |   | |  |  |||    | || || ||  |||    |                                                          
GAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag

upper sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 7
GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtga------acaattgcctgcgactatagtaagttgtt-tacctttcttcactttgacag-----------------------------------------------------------------------
|| |||||||| || || ||||  | |||||| ||||| || |||||||||||||| || || || |||||||| ||||| ||||| ||||| || ||||||  |||       |  |||     |   | |  |  |||  | | || || ||  |||   |||                                                                       
GAATTGTCTGCAAAGACAAAAACATTCTTTTCTACAGCAGTTGCAAAATGGGATGCTGAGTTCTATGTCAAAGTGGATGATGATGTCCATGTTAATTTAGgtatgtgctgtctcaatattcttaacatttttgttgtgtttctgtgccattgtttccttcaccagtttcctcctttacattcccctcacaagtaaggtttgttttgttctaacaagtaacaactactgccatgtag

upper sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: Vv18s0001g04150.t01 (Vitis vinifera), 5'ss of exon 7
GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtgaacaattgcctgcgactatagtaagttgtttacctttcttcactttgacag--------------------------------------------------------------
|| ||||| || ||||| ||||| | |||||| || ||||| |||||||||||||| || || || |||||||| ||||| ||||| ||||| || ||    |||| |  |||  |      || |  ||   |    |    |    | || ||||                                                               
GAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTT----GGgtaatgaatccctctttccttttttatcctccacaatactgaaaatttggacaaaccattgccaaacttgggtttctcaagttgttattcttgttgtggttttttttttggtatag