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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCAACTACAATAGATACTGGTTTTTTCATAGGGAGGGACGCATTTTTGTCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAAgtaagtgtttgagtcaagcttggattgtcagttcgctgacctgggcaaagcag

Basic information

species Selaginella moellendorffii
transcript EFJ19453
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169059325|gb|FE468000.1|FE468000
EST:     TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAA                         CTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
genomic: TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAAgtaagtgttt ... ggcaaagcagCTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
EST: gi|169030361|gb|FE437824.1|FE437824
EST:     TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAA                         CTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
genomic: TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAAgtaagtgttt ... ggcaaagcagCTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
EST: gi|169099828|gb|FE500833.1|FE500833
EST:     TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAA                         CTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
genomic: TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAAgtaagtgttt ... ggcaaagcagCTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
EST: gi|169064865|gb|FE475561.1|FE475561
EST:     TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAA                         CTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT
genomic: TCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAAgtaagtgttt ... ggcaaagcagCTCGATGAATTGCAGGAATCTTTGAACCCGAAAGGAGCAAGGGAGAAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCAACTACAATAGATACTGGTTTTTTCATAGGGAGGGACGCATTTTTGTCGAAAGTGAAGACGCAAACAGCTGGTCTTTCTACAGTTCAAAGAAGGAAgtaagtgtttgagtcaagcttggattgtcagttcgctgacctgggcaaagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA