1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggcaatgtgttatctactgctatactaattccatcttttatgcag
species | Selaginella moellendorffii |
transcript | EFJ18540 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGGEST: gi|169105291|gb|FE507628.1|FE507628
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGGEST: gi|169102152|gb|FE505778.1|FE505778
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGGEST: gi|169105683|gb|FE508449.1|FE508449
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGGEST: gi|169040327|gb|FE450251.1|FE450251
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: GCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGGEST: gi|169049667|gb|FE457759.1|FE457759
genomic: GCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGGEST: gi|169049666|gb|FE457758.1|FE457758
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: ATTTTTTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTTTGACAGTGTCATAATCGGGEST: gi|169051997|gb|FE460336.1|FE460336
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
EST: ATCTTTTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGAC GGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
genomic: ATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggca ... ttttatgcagGGGCATTCTACCAGCGATTCAGATCTTCTCTGACAGTGTCATAATCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCACATTTTGTTTTGCATCTTCTGCGCCGTCGCTCCTCCCATTGTGTTCAAAGGAAGATCATTGACgtaagcggcaatgtgttatctactgctatactaattccatcttttatgcag
- - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA