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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGCGATTAAATCCGTGTCCACACTGTCTGATGTAGAAGGCTTGTGCGAGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagcgttttagatttttgtaccttacgttcgtataaatcag

Basic information

species Selaginella moellendorffii
transcript EFJ17214
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169071789|gb|FE476646.1|FE476646
EST:     AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAG                         GACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
genomic: AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
EST: gi|169019355|gb|FE427665.1|FE427665
EST:     AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAG                         GACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
genomic: AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
EST: gi|169063357|gb|FE472191.1|FE472191
EST:     AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAG                         GACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
genomic: AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
EST: gi|169114901|gb|FE515850.1|FE515850
EST:     GACTTGTTGCTTGCGATGGAG                         GACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
genomic: GACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
EST: gi|169071790|gb|FE476647.1|FE476647
EST:     AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAG                         GACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
genomic: AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
EST: gi|169063356|gb|FE472190.1|FE472190
EST:     AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAG                         GACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
genomic: AGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA
EST: gi|169050265|gb|FE458345.1|FE458345
EST:     TCCGACTTTTTGCTTTGCGATTGAG                         GACTTGTTGCTTGAGCATCCATACACGCCAGAGGAGCTAGAGGAGCTATTA
genomic: TCCGACTTGTTGC-TTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 5

CGAGGCGATTAAATCCGTGTCCACACTGTCTGATGTAGAAGGCTTGTGCGAGGCGTATGCAACTTCTCGCGACTCGTCCGACTTGTTGCTTGCGATTGAGgtaaaaaagc ... tataaatcagGACTTGTTGCATGAGCATCCATACACGACAGAGGAGCTAGAGGAGCTATTAAAACACCCCCTAACTTCAATTTTCCCGAAGGGTTCGAGCTTCCAAGCTG




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