1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGCATCGGCAAAGGCAGTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaagatctcgttgtctttgatgtttcaaggaagagaaaaaaatctgtgtttgctcgtcgtttttgcag
species | Selaginella moellendorffii |
transcript | EFJ17026 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169112708|gb|FE515084.1|FE515084
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169112708|gb|FE515084.1|FE515084
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169112708|gb|FE515084.1|FE515084
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169112708|gb|FE515084.1|FE515084
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169054368|gb|FE460813.1|FE460813
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169054368|gb|FE460813.1|FE460813
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169054368|gb|FE460813.1|FE460813
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169054368|gb|FE460813.1|FE460813
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169054368|gb|FE460813.1|FE460813
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169049447|gb|FE459853.1|FE459853
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169049447|gb|FE459853.1|FE459853
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169049447|gb|FE459853.1|FE459853
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169049447|gb|FE459853.1|FE459853
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169049447|gb|FE459853.1|FE459853
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169088449|gb|FE495495.1|FE495495
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169088449|gb|FE495495.1|FE495495
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169088449|gb|FE495495.1|FE495495
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169088449|gb|FE495495.1|FE495495
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC GEST: gi|169088449|gb|FE495495.1|FE495495
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
EST: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAAC G
genomic: GTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaa ... gtttttgcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACGCTCTTCTACTAAAAGGAGGAGTCCCCGTTGGCATCGGCAAAGGCAGTGTGGTGAGGCGAGCAATTGTGGACAAGAACGCGCGAATTGGACAAAACgttcaggcaagatctcgttgtctttgatgtttcaaggaagagaaaaaaatctgtgtttgctcgtcgtttttgcag
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