1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAACCAGCTGACTGACGAACGCTCGAAACGCCAGCGTCGCAAGAGCAAGAAAACTAACAGCAAGAAAACTGAAGTCCAGGTTCCTGACAAGGTGGAAGAGgtaagctagtctcatatcatgctttcatctcagattattgatctttctttcacag
species | Selaginella moellendorffii |
transcript | EFJ15078 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAACTAACAGCAAGAAAACTGAAGTCCAGGTTCCTGACAAGGTGGAAGAG GTGGCGACTGATTTTAAAGAGGACAGCGTCGCAGAGATGGAATCCAAGGTTEST: gi|169051153|gb|FE458687.1|FE458687
genomic: AAACTAACAGCAAGAAAACTGAAGTCCAGGTTCCTGACAAGGTGGAAGAGgtaagctagt ... tctttcacagGTGGCGACTGATTTTAAAGAGGACAGCGTCGCAGAGATGGAATCCAAGGTT
EST: AAACTAACAGCAAGAAAACTGAAGTCCAGGTTCCTGACAAGGTGGAAGAG GTGGCGACTGATTTTAAAGAGGACAGCGTCGCAGAGATGGAATCCAAGGTT
genomic: AAACTAACAGCAAGAAAACTGAAGTCCAGGTTCCTGACAAGGTGGAAGAGgtaagctagt ... tctttcacagGTGGCGACTGATTTTAAAGAGGACAGCGTCGCAGAGATGGAATCCAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCAGCTGACTGACGAACGCTCGAAACGCCAGCGTCGCAAGAGCAAGAAAACTAACAGCAAGAAAACTGAAGTCCAGGTTCCTGACAAGGTGGAAGAGgtaagctagtctcatatcatgctttcatctcagattattgatctttctttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA