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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAAGTTGACAATGTTATAGATTTTAGCTGGTCACCAACCGATTCAATTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGGgtatgtatttgtgtttgatttctctacatgtgacctggtttgctctcaacttcaacag

Basic information

species Selaginella moellendorffii
transcript EFJ12681
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169041301|gb|FE446844.1|FE446844
EST:     TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGG                         GTCAGCCTGGTTCAAATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTT
genomic: TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGGgtatgtattt ... acttcaacagGTCAGCCTGGTTCAAATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTT
EST: gi|169087397|gb|FE492200.1|FE492200
EST:     TTCTGGCCCTTTTTGTCCCAGAAGGCAACGGTGGCAATCAGCCTGCGAGG                         GTTAGCCTGGTTCAAATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTT
genomic: TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGGgtatgtattt ... acttcaacagGTCAGCCTGGTTCAAATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTT
EST: gi|169030830|gb|FE436811.1|FE436811
EST:     TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGG                         GTCAGCCTGGTTCAAAT
genomic: TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGGgtatgtattt ... acttcaacagGTCAGCCTGGTTCAAAT
EST: gi|169030052|gb|FE440518.1|FE440518
EST:     TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGG                         GTCAGCCTGGTTCANATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTT
genomic: TTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGGgtatgtattt ... acttcaacagGTCAGCCTGGTTCAAATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 34 (downstream exon)
Score: 13

GCTGAAAGTTGACAATGTTATAGATTTTAGCTGGTCACCAACCGATTCAATTCTGGCCCTTTTTGTTCCAGAAGGCAACGGTGGCAATCAACCTGCGAGGgtatgtattt ... acttcaacagGTCAGCCTGGTTCAAATTCCTGGCAGGGAAGAACTGAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAACGGAGACTATC




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