1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGATACCTCGTTGGACTATCTGGATGGAGGGGAGAATGATGCATTCTTTAAGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAAgtaagactcttcccatgactctttttttgaagtttagtgcaacagctggttttcttttttgtttaactgtcaaactttgctgcag
species | Selaginella moellendorffii |
transcript | EFJ12059 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAA GAGGAGACCAGTCCAAAGCACTGTAGCATTGCGTATGAGACACACACGGGCEST: gi|169065102|gb|FE474550.1|FE474550
genomic: AGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAAgtaagactct ... tttgctgcagGAGGAGACCAGTCCAAAGCACTGTAGCATTGCGTATGAGACACACACGGGC
EST: AGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAA GAGGAGACCAGTCCAAAGCACTATAGCATTGCGTATGAGACACACACGGGCEST: gi|169038386|gb|FE446087.1|FE446087
genomic: AGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAAgtaagactct ... tttgctgcagGAGGAGACCAGTCCAAAGCACTGTAGCATTGCGTATGAGACACACACGGGC
EST: AGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAA GAGGAGACCAGTCCAAAGCACTGTAGCATTGCGTATGAGACACACACGGGC
genomic: AGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAAgtaagactct ... tttgctgcagGAGGAGACCAGTCCAAAGCACTGTAGCATTGCGTATGAGACACACACGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATACCTCGTTGGACTATCTGGATGGAGGGGAGAATGATGCATTCTTTAAGACCAAGGATGCTACCGAAGAGTCCGACCAGTCGAGTTCTTTAGAGCAAgtaagactcttcccatgactctttttttgaagtttagtgcaacagctggttttcttttttgtttaactgtcaaactttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA