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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTCATTGATCCACGACAGAAACCCCCTGGTGTTATGGGCTGGTGGCCTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtcttgcatgagttcctgaagtgactgaaagtttttattctggcacag

Basic information

species Selaginella moellendorffii
transcript EFJ10742
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ10742 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S342_20V6.1 (Physcomitrella patens), 5'ss of exon 15
GAGACTCATTGATCCACGACAGAAACCCCCTGGTGTTATGGGCTGGTGGCCTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtcttgcatgagttcctga------------agtgactgaaagtttttattctggcacag--------------------------------------------------------------------------------------
|||| | || ||||| | |  |||||| || || || |||||||||||||||||  | || || || |||||||||||||| ||||| |||||||| |||||  ||  |||  |     |||  ||             || || | |||| | || |  |  |                                                                                         
GAGATTGATAGATCCTCAAGGGAAACCACCCGGAGTGATGGGCTGGTGGCCTTCTCGTGCAGTCACGTTCCTTGAGAACCATGACACCGGATCAACGCAGgtttgcactctatctaccattctagacttgatctatttggtaaccgtaagtatctagttagataattttagtcctgtatgctacaaaccactacaatcgtcgtccttgagtacttgacatgaccctgatagtgccatacgttactgttttcag

upper sequence: EFJ10742 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S100_191V6.1 (Physcomitrella patens), 5'ss of exon 12
GAGACTCATTGATCCACGACAGAAACCCCCTGGTGTTATGGGCTGGTGGCCTTCGAGAGCGGTAACATTCCTTGAGAACCACGACACAGGATCAACTCAGgtacgccgtcttgcatga-gttcctgaagtgactgaaagtttttattctggcacag--------------------------------------------------------------------------------------------------------
|||| | || ||||| | |   ||||| ||||| || ||||| |||||||||||  | || || || ||||||||||| ||||| || ||||||||||||||        |  |||   ||   |||  || ||            ||||  |  |                                                                                                        
GAGATTAATAGATCCTCAAGGAAAACCACCTGGAGTGATGGGTTGGTGGCCTTCTCGTGCAGTTACTTTCCTTGAGAATCACGATACCGGATCAACTCAGgtctctaccttaacattctgtcagtgatatgcctctggacgaactgtctgaaattgaaatacaatatacatgatgtagatacttatgttgtaagcttcagtgatcttcataattgagcacttgccatgccgctaacattggcacatggtgccgtctccag