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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAAgtaagagctctgttaccgtgaatgctaagctccaagtttgtgattattcag

Basic information

species Selaginella moellendorffii
transcript EFJ10043
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ10043 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 8
GCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAAgtaa------gagctctgttaccgtgaatg---ctaagctcca--agtt--------tgtgattattcag--------------------------
|  | ||  |    || || ||||| ||  | || || ||  |   |||||||||||||||||| ||||||||||| ||  ||| || ||||      | |   |||      |||||   | |  | | |  ||||        ||||| | |  ||                          
GTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAGgtaattccatgggacttgtattttagaatgaggccattccctatcagttctcttcattgtgactttgtagttatctgatcttgtttcttattgtag

upper sequence: EFJ10043 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA06G11330.1 (Glycine max), 5'ss of exon 8
GCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAAgtaag--agctctgttaccgtgaatgc---taagctccaagttt-gtgattattcag---------------------------------------------------------
|  | ||  |    || || ||||| |||  ||| || ||  | | ||||||||| |||||||| ||||||||||||||  ||  ||||||||  | ||    | |  ||  |||   |||  |   ||    | |  || ||                                                           
GTGTCCTGGCAACAACCCTTGCTCGTCATCTATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtcaactagacttctatgtgtgcgcataaaatattagcaaagaggctactcctcttctatgcttcccattgtggctttgtatttatgtttgactttgttttgtattttag

upper sequence: EFJ10043 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 8
GCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAAgtaagagctctg----ttaccgtgaatgc-taagctccaagttt-gtgattattcag----------------------------------
|  |  |  |    || || ||||| ||| |||| || ||  | | ||||||||| |||||||| ||||||||||||||  ||  ||||||||  | ||     |    |||  ||| |||  |   |||   | |   | ||                                    
GTGTCTTGGCAACAACCCTTGCTCGTCATCGATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccactagacttctatgtgtgtgcataaaatattagtaaagaggccactcctcttctatgctcctcattgtgactttgtattttag