1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCTGAGATTCGCAACGCTCTGAGAAAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaacttttaagttaacttccaacggcattggtgccaaaaactcaacctgaaaaactcacag
species | Selaginella moellendorffii |
transcript | EFJ07797 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169102265|gb|FE506528.1|FE506528
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTCAAAGATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169047018|gb|FE455097.1|FE455097
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169062632|gb|FE470302.1|FE470302
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169048028|gb|FE456028.1|FE456028
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169049584|gb|FE457728.1|FE457728
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169077949|gb|FE489852.1|FE489852
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGGGGTCGACGTCAG GTTCCCCGATGGAGTCAAAGATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169058265|gb|FE466019.1|FE466019
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTCAAAGATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169103790|gb|FE506155.1|FE506155
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169050086|gb|FE460154.1|FE460154
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169036383|gb|FE445748.1|FE445748
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169047574|gb|FE455158.1|FE455158
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTCAAAGATCCCGCAGAGATGGAACGCTCAATNCA-CAEST: gi|169049215|gb|FE459491.1|FE459491
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAAT-CAACA
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169047058|gb|FE455098.1|FE455098
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169048029|gb|FE456029.1|FE456029
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACATEST: gi|169102264|gb|FE506527.1|FE506527
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
EST: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAG GTTCCCCGATGGAGTCAAAGATCCCGCAGAGATGGAACGCTCAATCAACAT
genomic: AAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaa ... aaactcacagGTTCCCCGATGGAGTAAAAAATCCCGCAGAGATGGAACGCTCAATCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGAGATTCGCAACGCTCTGAGAAAAGATGGACCCGTTATCACGGATCTTGGAAACATGGTGGTCGACGTCAGgtgtggaaaacttttaagttaacttccaacggcattggtgccaaaaactcaacctgaaaaactcacag
- - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG