1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGAGCTCCTCCAGACAGTGCAATACTTGTCACCATATCCAAGCTGCTCCAATTTTATTCTTTGTTCCGTCTCTGGCAACCGCAGCGCCAAGGAGCTCAAGgtagacagtatttccaaaatgaaaaagaaagcatttggctcagtattgtaagtgcag
species | Selaginella moellendorffii |
transcript | EFJ04411 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTTTATTCTTTGTTCCGTCTCTGGCAACCGCAGCGCCAAGGAGCTCAAG GATGGATTAGCAAAAATGGGAGTGATGGTTCGCCATTATGATAACGCGGAGEST: gi|169050122|gb|FE460190.1|FE460190
genomic: ATTTTATTCTTTGTTCCGTCTCTGGCAACCGCAGCGCCAAGGAGCTCAAGgtagacagta ... gtaagtgcagGATGGATTAGCAAAAATGGGAGTGATGGTTCGCCATTATGATAACGCGGAG
EST: GCAACCGCAGCGCCAAGGAGCTCAAG GATGGATTAGCAAAAATGGGAGTGATGGTTCGCCATTATGATAACGCGGAG
genomic: GCAACCGCAGCGCCAAGGAGCTCAAGgtagacagta ... gtaagtgcagGATGGATTAGCAAAAATGGGAGTGATGGTTCGCCATTATGATAACGCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTCCTCCAGACAGTGCAATACTTGTCACCATATCCAAGCTGCTCCAATTTTATTCTTTGTTCCGTCTCTGGCAACCGCAGCGCCAAGGAGCTCAAGgtagacagtatttccaaaatgaaaaagaaagcatttggctcagtattgtaagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA