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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaacacgctcagttctctcccttggacctgatgaatgattcgtggcaattatagctactcacacag

Basic information

species Selaginella moellendorffii
transcript EFJ37634
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37634 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G120175_T04 (Zea mays), 5'ss of exon 7
GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaa--cacgctcagttctctccct-tggacctgatgaatgattcgtg--gcaattatagctactcacacag----------------------------------------------------------------------------------------------------------------------
||||| ||||| |||||||| || || || |||||| | || || || ||||||||| | || ||||| || || ||||| ||||||||||||||||     | |  |   |   | | |  |  |  ||  |  ||| |   |||||| ||    ||||  ||                                                                                                                       
GCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatt-tactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: EFJ37634 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G120175_T01 (Zea mays), 5'ss of exon 1
-------GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaa--cacgctcagttctctccct-tggacctgatgaatgattcgtg--gcaattatagctactcacacag----------------------------------------------------------------------------------------------------------------------
       ||||| ||||| |||||||| || || || |||||| | || || || ||||||||| | || ||||| || || ||||| ||||||||||||||||     | |  |   |   | | |  |  |  ||  |  ||| |   |||||| ||    ||||  ||                                                                                                                       
GCTGTAGGCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaatt-tactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: EFJ37634 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 7
GCACTCGACACTTTCAACACTGCCATCGTTTCTCCAGTCTACTACGTCATGTTCACAGCGCTGACAATCCTCGCGAGCGTGATAATGTTCAAGgtaacacgctcagttct----ctcccttggacctgatgaatgattcgtggcaattatagctactcacacag------------------------------
|| || || ||||||||||||||  | || || ||  | || || |||||||||||| | || |||||||| || || ||||||||||||||||||      ||  |           |||   |  ||||  || ||| |   |  |||| ||  | |   |                               
GCTCTTGATACTTTCAACACTGCAGTTGTGTCCCCCATATATTATGTCATGTTCACATCACTTACAATCCTTGCTAGTGTGATAATGTTCAAGgtattgtcttctttatcagtggcatcttatgctggatgc-tgtttcctccaacctataactttttagcaaatatagcttcatttttaggtttgctttatta