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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagctttggcctctttgtactcatgactgtcttgtctcgtag

Basic information

species Selaginella moellendorffii
transcript EFJ34434
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169113000|gb|FE515480.1|FE515480
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169031797|gb|FE438482.1|FE438482
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169055215|gb|FE461076.1|FE461076
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169031872|gb|FE438505.1|FE438505
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169112151|gb|FE513494.1|FE513494
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169060203|gb|FE467565.1|FE467565
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169110929|gb|FE509334.1|FE509334
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169048945|gb|FE456062.1|FE456062
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169112990|gb|FE515470.1|FE515470
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCGCAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169058238|gb|FE466005.1|FE466005
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169031935|gb|FE440661.1|FE440661
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169114468|gb|FE516538.1|FE516538
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169065200|gb|FE474024.1|FE474024
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169039673|gb|FE448607.1|FE448607
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169112152|gb|FE513495.1|FE513495
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169096046|gb|FE500024.1|FE500024
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169021618|gb|FE432137.1|FE432137
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169096045|gb|FE500023.1|FE500023
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169093446|gb|FE495727.1|FE495727
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169031873|gb|FE438506.1|FE438506
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169039672|gb|FE448606.1|FE448606
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169044448|gb|FE451072.1|FE451072
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169021619|gb|FE432138.1|FE432138
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
EST: gi|169021385|gb|FE431176.1|FE431176
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 71

AATCAACCAAGCTATCGGGGCTACAGGGCTCGTCAGCGAGGAGTGTAAGATGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACGCCCGACAGAGTATGTGCTCAAGCTGGAGTCTGCTCTCTTCGTAATGACAA




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