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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAAGCTGTGGAGAAGGATGCGACGAAGACACCAGTACAAGATGGCACAGTGCATCCTCTTACTAGCTATGTTATCAACTACGTGAAGTTCCTCTTTGAgtaagttcaagtatttccaatccttttttcatagtttggatggttcctag

Basic information

species Selaginella moellendorffii
transcript EFJ31732
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31732 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 7
TCGAAGCTGTGGAGAAGGATGCGACGAAGACACCAGTACAAGATGGCACAGTGCATCCTCTTACTAGCTATGTTATCAACTACGTGAAGTTCCTCTTTGAgtaagttcaagtat------------ttccaatccttttttcatagtttggatggttcctag--------------------------------------
  || || || ||||| ||||| ||||||||  |||||  |||||| || || |||||||| || |||||||| || ||||| ||||||||  | ||||||||||||||  |||            | |||||  | |   ||||   |  ||  || ||||                                      
AAGAGGCAGTTGAGAAAGATGCTACGAAGACTGCAGTAACAGATGGAACTGTCCATCCTCTAACAAGCTATGTAATTAACTATGTGAAGTTTTTATTTGAgtaagttcagctatgttgtcatctgatcccaattttgtagccataccatcaattatttctagcattttttgctgtgttcactgatgacaaaaatgttagt

upper sequence: EFJ31732 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA20G33590.1 (Glycine max), 5'ss of exon 7
TCGAAGCTGTGGAGAAGGATGCGACGAAGACACCAGTACAAGATGGCACAGTGCATCCTCTTACTAGCTATGTTATCAACTACGTGAAGTTCCTCTTTGAgtaagttcaagtattt------ccaatccttttttcatagtt---tggatggttcctag-----------------------------------------
  || || || ||||| ||||| || |||||  |||||  |||||| || || |||||||| || |||||||| || ||||| ||||||||  | ||||||||||||||  ||| |      |  ||||   |||  |||     |  ||  || ||||                                         
AAGAGGCAGTTGAGAAAGATGCTACAAAGACTGCAGTAACAGATGGAACTGTCCATCCTCTAACAAGCTATGTAATTAACTATGTGAAGTTTTTATTTGAgtaagttcagctatgttgtcatctgatcccaattttgtagccgcatcaattatttctagcattttttgctgtgttcactgatgacaaaaatgttagtcat