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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTAACTCGCGAGTGGACATTAGAAGGCGGCGCCTTGGTCTTGGCCGATCGTGGAATCTGCCTCATTGATGAGTTTGACAAAATGAATGACCAAGACAGgtattttaaacgcagggcttacaatgtcttactcgggagtattttttcag

Basic information

species Selaginella moellendorffii
transcript EFJ31227
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31227 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GRMZM2G139894_T02 (Zea mays), 5'ss of exon 11
CTGTAACTCGCGAGTGGACATTAGAAGGCGGCGCCTTGGTCTTGGCCGATCGTGGAATCTGCCTCATTGATGAGTTTGACAAAATGAATGACCAAGACAGgtattttaaac-gcagggcttacaatgtcttactcgggagtattttttcag-----------------------------------
| ||||| || || |||||| | || || || ||  | ||  | || ||| | || || ||||||||||||||||||||||| |||||||| ||||| ||||||  || ||     |  ||   ||||| |   |      | ||| |                                      
CAGTAACACGAGAATGGACACTTGAGGGAGGTGCACTAGTTCTTGCTGATAGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatataccatttgtatttggatgtcctgtgctatttaaatttctgtattaccaaaaatgtaattttcttctgattgtttcag

upper sequence: EFJ31227 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 10
CTGTAACTCGCGAGTGGACATTAGAAGGCGGCGCCTTGGTCTTGGCCGATCGTGGAATCTGCCTCATTGATGAGTTTGACAAAATGAATGACCAAGACAGgtattttaaacgcagggcttacaatgtctta----ctcgggagtattttttcag--------------------------------------
| || ||  | ||||||||  | ||||| || ||  | ||  | || ||  | ||||| || || ||||||||||||||||| ||||||||||| || |||||     ||    |  |||  ||   |||      ||   | ||  || | |                                       
CAGTCACAAGGGAGTGGACTCTTGAAGGGGGGGCGCTTGTTCTAGCTGACAGAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGgtaa---gaaaattgaccttgtaaatccttgagttttcttaattacattattatccttgatcattaatttatatttatatttttgttaccag

upper sequence: EFJ31227 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 10
CTGTAACTCGCGAGTGGACATTAGAAGGCGGCGCCTTGGTCTTGGCCGATCGTGGAATCTGCCTCATTGATGAGTTTGACAAAATGAATGACCAAGACAGgtat-----tttaaacgcagggcttacaatgtctta----ctcgggagtattt-tttcag------------------------------
|||| || ||||| |||||| | ||||| || ||  | ||  | || |||   |||||||| || ||||||||||||||||| |||||||| |||||||||||      | ||   ||     ||    |   | |    || |  |  |||| | |||                               
CTGTCACACGCGAATGGACACTTGAAGGAGGGGCTCTTGTTCTAGCAGATAAAGGAATCTGTCTAATTGATGAGTTTGACAAGATGAATGATCAAGACAGgtaaggaaatgtatgtgcgtatattttggtacttcaatcccttgcaaaaatttgtatcatgtgaacaagaaagtttatatcctctattag