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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCATGAGAACTCGCTTATGGAACATCATATTGCTCTCCCTGCGGGTGCTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggtaagtggtccctgtggtatcgtttggactcacgttttgctgtag

Basic information

species Selaginella moellendorffii
transcript EFJ30330
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169055455|gb|FE465853.1|FE465853
EST:     CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169098593|gb|FE497219.1|FE497219
EST:     ACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: ACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169081165|gb|FE489259.1|FE489259
EST:     CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169074666|gb|FE480896.1|FE480896
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169075918|gb|FE482837.1|FE482837
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169096021|gb|FE500012.1|FE500012
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169067638|gb|FE475315.1|FE475315
EST:     CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169077659|gb|FE484921.1|FE484921
EST:     GCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: GCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169047687|gb|FE454855.1|FE454855
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAA                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169058961|gb|FE467729.1|FE467729
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169045569|gb|FE452530.1|FE452530
EST:     CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169080609|gb|FE490952.1|FE490952
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169038846|gb|FE446989.1|FE446989
EST:     CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169094897|gb|FE491631.1|FE491631
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
EST: gi|169083648|gb|FE495381.1|FE495381
EST:     CTATGGGGAAAATAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAG                         GACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG
genomic: CTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 13

TGTCCATGAGAACTCGCTTATGGAACATCATATTGCTCTCCCTGCGGGTGCTATGGGGAAAGTAACTTATATTGCACCGCATGGTCAGTATAGTCTCCAGgttagtggta ... tttgctgtagGACAAGGTTCTGGAGCTTGAATTTCAAGGTACAAAGAAGCAGTTCACTATGCTTCAG




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