1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGACGGAGGTTCAGTGAAGGTACCAGTGCTGACAGAGAAATCCAAAGAACACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattgaaagtttctcatgttctatatagttggcctcttgtccag
species | Selaginella moellendorffii |
transcript | EFJ28962 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAG GTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTCEST: gi|169071646|gb|FE477088.1|FE477088
genomic: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattg ... tcttgtccagGTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTC
EST: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAG GTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTCEST: gi|169043515|gb|FE452635.1|FE452635
genomic: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattg ... tcttgtccagGTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTC
EST: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAG GTGAAAATGATCATGGCA-CCAACAGACCCGATGTCTTEST: gi|169027922|gb|FE434929.1|FE434929
genomic: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattg ... tcttgtccagGTGAAAATGATCATGGCAACCAACAGACCCGATGTCTT
EST: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAG GTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTCEST: gi|169043514|gb|FE452634.1|FE452634
genomic: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattg ... tcttgtccagGTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTC
EST: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAG GTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTCEST: gi|169081464|gb|FE487725.1|FE487725
genomic: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattg ... tcttgtccagGTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTC
EST: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAG GTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTC
genomic: CACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattg ... tcttgtccagGTGAAAATGATCATGGCAACCAACAGACCCGATGTCTTGGATCCAGCGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGACGGAGGTTCAGTGAAGGTACCAGTGCTGACAGAGAAATCCAAAGAACACTTATGGAACTCTTAAATCAGCTAGATGGGTTTGATCAGCTTGGAAAGgtagggattgaaagtttctcatgttctatatagttggcctcttgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT